species:   Rhsol
pid:       PID0523
parent:    Rhi-milR-62
paralog:   
locus:     KB317713.1:120946-121014
matures:   ['CUGGAGUGUUGCGGCUUUGG', 'AGAGUUGGUAGCCACGGGA']
srr:       SRR1994873
genome:    /Users/jax/+Genomes/Fungal_genomes/Rhsol.AFRT00000000.1_scaffolds.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lin2016-hq.SRR1994873.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lin2016-hq.SRR1994873.cram KB317713.1:120946-121014

1 out of bounds
33 alignments
33 proper strand
33 stranded perfect matches

       ***********************        **********************         
GGGAUGUGUCCUGGAGUGUUGCGGCUUUGGGACUGUUCCCAGAGUUGGUAGCCACGGGACUCGUCCCAG
((((((.((((((..((....(((((((((((....)))))))))))...))..)))))).))))))..
----------CUGGAGUGUUGCGGCUUUGG--------------------------------------- l=20 a=0 c
----------------------------------------AGAGUUGGUAGCCACGGGA---------- l=19 a=0 c*
---------CCUGGAGUGUUGCGGCUUUGG--------------------------------------- l=21 a=12 ma
----------------------------------------AGAGUUGGUAGCCACGGGAC--------- l=20 a=0 ma*

---------------------------------------CAGAGUUGGUAGCCACGGG----------- l=19 a=1 
-------------------------------ACUGUUCCCAGAGUUGGUAGCC---------------- l=22 a=1 
----------------------------GGGACUGUUCCCAGAGUUGGUAGCCACGGGA---------- l=31 a=3 
--------------------------UUGGGACUGUUCCCAGAGUUGGUAGCCACG------------- l=30 a=1 
------------------UUGCGGCUUUGGGACUGU--------------------------------- l=18 a=1 
------------------UUGCGGCUUUGGGACUGUUCC------------------------------ l=21 a=1 
----------------UGUUGCGGCUUUGGGAC------------------------------------ l=17 a=1 
--------------AGUGUUGCGGCUUUGGG-------------------------------------- l=17 a=1 
--------------AGUGUUGCGGCUUUGGGACU----------------------------------- l=20 a=2 
------------GGAGUGUUGCGGCUUUGG--------------------------------------- l=18 a=1 
-----------UGGAGUGUUGCGGCUUUGGG-------------------------------------- l=20 a=1 
---------CCUGGAGUGUUGCGGCU------------------------------------------- l=17 a=1 
---------CCUGGAGUGUUGCGGCUUUG---------------------------------------- l=20 a=4 
---------CCUGGAGUGUUGCGGCUUUGG--------------------------------------- l=21 a=12 (ma)
------UGUCCUGGAGUGUUGCGGC-------------------------------------------- l=19 a=1 
---AUGUGUCCUGGAGUGUUGCGGC-------------------------------------------- l=22 a=1 

mb-01111
ax-1001011
ku-01
ss-101111101100
fn-111
